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New Bio4j General Domain Model Schema Available

Hi everyone! It’s been a few months already since I published the last post but that doesn’t mean that the development process of Bio4j was stopped,...

0 replies - 4348 views - 05/18/12 by Pablo Pareja Tobes in Articles

Bio4j 0.7 Release Gains Cypher and Gremlin Support

Learn about the newest release of Bio4j, which now includes AWS instances from any region, a basic REST server, and support for Cypher and Gremlin.Hi ! I’m...

0 replies - 3252 views - 01/13/12 by Pablo Pareja Tobes in Articles

Using Bio4j + Neo4j Graph-algo component for finding protein-protein interaction paths

Hi all ! Today I managed to find some time to check out the Graph-algo component from Neo4j and after playing with it plus Bio4j a bit, I have to say it seems...

2 replies - 4356 views - 12/31/11 by Pablo Pareja Tobes in Articles

Bio4j + AWS CloudFormation = your own fresh baked DB in less than a minute!

Hi! So this week it was time to finally start using CloudFormation together with Bio4j. For those not familiar with this AWS service, quoting from...

0 replies - 3922 views - 12/08/11 by Pablo Pareja Tobes in Articles

Bio4jExplorer: familiarize yourself with Bio4j nodes and relationships

In October I uploaded a new tool aimed to be used both as a reference manual and initial contact for Bio4j domain model: Bio4jExplorer Bio4jExplorer allows...

0 replies - 4019 views - 12/03/11 by Pablo Pareja Tobes in Articles

Bio4j Go Tools

UPDATE: This post is from March 2011 so if you are interested in this tool please check all the features and functionality that have been added from that time...

2 replies - 3463 views - 12/01/11 by Pablo Pareja Tobes in Articles

Cool GO annotation visualizations with Gephi + Bio4j

Hi everyone! After a few months without finding the opportunity to play with Gephi, it was already time to dedicate a lab day to this. I thought that...

2 replies - 4255 views - 11/29/11 by Pablo Pareja Tobes in Articles